Virtual Plant @ Inria


Measured variables 3D-reconstruction, network structure
Operating system mac, windows, linux
Licence open-source
Automation level automated
Plant requirements any
Export formats mtg
Other information Work within the OpenAlea pipeline

Scientific article(s)

DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution
Guillaume Cerutti, Olivier Ali, Christophe Godin
Frontiers in Plant Science, 2017 View paper

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DRACO-STEM is a two-stage computational pipeline that generates a complete 3D triangular mesh of the tissue volume based on a segmented tissue image stack. DRACO (Dual Reconstruction by Adjacency Complex Optimization) is designed to retrieve the underlying 3D topological structure of the tissue and compute its dual geometry, while STEM (SAM Tissue Enhanced Mesh) returns a faithful triangular mesh optimized along several quality criteria (intrinsic quality, tissue reconstruction, visual adequacy). Quantitative evaluation tools measuring the performance of the method along those different dimensions are also provided. The resulting meshes can be used as input and validation for biomechanical simulations. Source: Frontiers in Plant Science article

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