Measured variables growth
Operating system windows, mac, linux
Licence open-source, freeware
Automation level automated
Plant requirements -
Export formats txt
Other information Imagej macro

Scientific article(s)

HyphaTracker: An ImageJ toolbox for time-resolved analysis of spore germination in filamentous fungi
Michael Brunk,Sebastian Sputh,Sören Doose,Sebastian van de Linde,Ulrich Terpitz
Scientific Reports, 2018 View paper

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HyphaTracker allows for processing of microscopic acquisitions (movies) of conidial germination starting with drift correction and data reduction prior to germling analysis. From the image time series germling related region of interests (ROIs) are extracted, which are analysed for their area, circularity, and timing. ROIs originating from germlings crossing other hyphae or the image boundaries are omitted during analysis. Each conidium/hypha is identified and related to its origin, thus allowing subsequent categorization.

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