Computational Biology Group @ University of Lausanne
|Measured variables||length, curvature|
|Operating system||mac, windows, linux|
Nuclear Phytochrome A Signaling Promotes Phototropism in ArabidopsisC. Kami, M. Hersch, M. Trevisan, T. Genoud, A. Hiltbrunner, S. Bergmann, C. FankhauserTHE PLANT CELL ONLINE, 2012 View paper
Other tools for the analysis of hypocotyl:
Hypophen is an open-source software enabling the semi-automatic phenotyping of growing seedlings from time-lapse images. More precisely, it computes and records the elongation and bending of the seedlings. It is semi-automatic in the sense that manual calibration, verification and adjustments are sometimes needed. For an experienced user, it allows a throughput of about 50 images of 20 hypocotyls in about 10 minutes, given a reasonable image quality.
Source: HypoPhen website