Leaf Color Segmentation

Scientific Computing Research Unit @ Helmholtz Zentrum München


Measured variables surface, convex-hull
Operating system windows, mac, matlab
Licence freeware
Automation level automated
Plant requirements arabidopsis
Export formats xls
Other information -

Scientific article(s)

A segmentation procedure using colour features applied to images of Arabidopsis thaliana
Ruben Ispiryan, Igor Grigoriev, Wolfgang zu Castell, Anton R. Schäffner
Functional Plant Biology, 2013 View paper

Similar tools

Other tools for the analysis of rosette:


The library ‘colorsegmentation’ is designed to separate objects in series of images. It is based on the color features of objects. For each object type (flower, leaf, soil, etc) user should specify few pixels by clicking on the training image on the corresponding object. In an excel file (version 2003) the regions for each color feature are determined based on the visual inspection. Using this configuration excel file, images are segmented and the objects are separated.

Source: Software webpage

Share your experience

blog comments powered by Disqus