Robatzek lab @ Sainsbury Laboratory


Measured variables localisation, n-plasmodesmata, perimeter, shape, width, length, surface
Operating system windows
Licence freeware
Automation level automated
Plant requirements Arabidopsis
Export formats csv
Other information Requires Acapella to run

Scientific article(s)

A Developmental Framework for Complex Plasmodesmata Formation Revealed by Large-Scale Imaging of theArabidopsisLeaf Epidermis
Jessica Fitzgibbon, Martina Beck, Ji Zhou, Christine Faulkner, Silke Robatzek, Karl Oparka
The Plant Cell, 2013 View paper

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PDQUANT provides an automated image processing workflow that detected and quantified plasmodesmata candidates, identified cell boundaries, and segmented immature cells from older cells. The algorithm segments and quantifies epidermal cells with differentiation of mature from young emerging cells.

Source: Fitzgibbon et al. (2013) The Plant cell , 25(1), 57-70

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