Hanchuan Peng lab


Measured variables 3D-reconstruction, surface
Operating system mac, windows, linux
Licence freeware, open-source
Automation level automated
Plant requirements any
Export formats -
Other information -

Scientific article(s)

Extensible visualization and analysis for multidimensional images using Vaa3D
Hanchuan Peng, Alessandro Bria, Zhi Zhou, Giulio Iannello, Fuhui Long
Nature Protocols, 2014 View paper

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Vaa3D is a cross-platform (Mac, Linux, and Windows) tool for visualizing large-scale (gigabytes, and 64-bit data) 3D image stacks and various surface data. It is also a container of powerful modules for 3D image analysis (cell segmentation, neuron tracing, brain registration, annotation, quantitative measurement and statistics, etc) and data management. This makes Vaa3D suitable for various bioimage informatics applications, and a nice platform to develop new 3D image analysis algorithms for high-throughput processing. In short, Vaa3D streamlines the workflow of visualization-assisted analysis.

Source: Vaa3D webpage

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