ARADEEPOPSIS
Patrick Hüther , Niklas Schandry , Katharina Jandrasits , Ilja Bezrukov , Claude Becker
Overview
| Measured variables | area, filled area, convex hull area, solidity, major axis length, minor axis length, aspect ratio, eccentricity, extent, perimeter, equivalent diameter, color measurements |
|---|---|
| Operating system | Linux |
| Licence | Open source |
| Automation level | Automated |
| Plant requirements | Arabidopsis thaliana |
| Export formats | csv |
| Other information |
Scientific article(s)
ARADEEPOPSIS, an Automated Workflow for Top-View Plant Phenomics using Semantic Segmentation of Leaf StatesPatrick Hüther,Niklas Schandry,Katharina Jandrasits,Ilja Bezrukov,Claude BeckerThe Plant Cell, 2020 View paper
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Description
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images.