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  • 202 tools | 42 datasets | 111 models |
Cite us

If for any reason you would like to cite this website (we would be very pleased), please use one of the following citation:

Connecting plant phenotyping and modelling communities. lessons from science mapping and operational perspectives
Saint Cast C, Lobet G, Cabrera-Bosquet L, Couvreur V, Pradal C, Tardieu F, Draye X
2022, in silico Plants
View at publisher | Download PDF
Image analysis in plant sciences: Publish then Perish
Lobet G.
2017, Trends in Plant Science
View at publisher | Download PDF
An online database for plant image analysis software tools
Lobet G., Draye X., Périlleux C.
2013, Plant Methods, vol. 9 (38)
View at publisher | Download PDF
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RootPainter

root-system

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EasyPCC

canopy

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LeafScan

leaf

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Assess 2.0

leaf

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archiDART

root-system

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ARIA

root-system

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Balloon Plugin

cell

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BioImageXD

general

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BioLeaf

leaf

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Bisque

general

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Maize Kernel-Ear-Cob Analysis

fruit

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Black Spot

leaf

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Image Harvest

shoot

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BRAT

single-root

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Callose Measurer

cell

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Canopy Analysis

canopy

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Canopy Reconstruction

shoot

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Cefiler

cell

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Celer

cell

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Cell-o-Tape

single-root

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CellArchitect

cellleaf

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CellProfiler

cell

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CellSeT

single-root

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Circumnutation Tracker

hypocotylshoot

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CompuEye

leaf

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Costanza

cell

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Cytomine

general

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DART

root-system

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DIRT

root-system

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DRACO-STEM

cell

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Deep Plant Phenomics

rosette

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DynamicRoots

root-system

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Easy Leaf Area

leaf

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ElonSim

root-systemsimulation

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Endomembrane Quantifier

cell

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Endrov

general

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EZ-Rhizo

root-system

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FibrilTool

cell

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Germinator

seed

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GiA Roots

root-system

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GLO-RIA

root-system

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GrainScan

seed

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GrowScreen

rosette

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GrowScreen-Fluoro

shoot

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GrowScreen-Root

root-system

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GROW Map-Leaf

leaf

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GROW Map-Root

single-root

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Growth Explorer

root-system

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HEMIv9

canopy

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HPGA

rosette

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GT-RootS

root-system

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HTPheno

shoot

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HyDE

hypocotyl

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HypoPhen

hypocotyl

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HYPOTrace

hypocotyl

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HyphaTracker

fungi

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IAP

shoot

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Icy

general

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Identify

leafplant

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IJ_Rhizo

root-system

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ImAGE

canopyleaf

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ImageJ

general

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img2net

general

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iRoCS Toolbox

single-rootcell

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KineRoot

single-root

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LAMINA

leaf

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LHDetect2

Leaf

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Lamina2Shape

leaf

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Kymorod

shoot

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LEAF GUI

leaf

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LeafAnalyser

leaf

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Leaf Angle Distribution Toolbox

shoot

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Leaf Doctor

leaf

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Leaf Color Segmentation

rosette

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LeafByte

leaf

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Leaf-GP

leafcanopy

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Leaf Growth

leaf

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LeafJ

leaf

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Leaf Processor

leaf

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Leaf recognition

leaf

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Leaf Necrosis Classifier [Depricated]

leaf

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LeafSnap

leaf

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Leaf Venation [Depricated]

leaf

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Leaver

leaf

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Lemna Launcher

seed

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LemnaGrid

rosetteshoot

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Limani

leaf

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LithoGraphX

any

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LobeFinder

cellleaf

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MARS-ALT

cell

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Martrack Leaf

leaf

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Matlab

general

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MicroFilament Analyser

cell

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MorphoGraphX

general

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MorphoLeaf

leaf

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MowJoe

leaf

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MorphoSnake

root-systemshoot

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MVApp

general

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MyROOT

single-root

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NEFI

leaf

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NMRooting

root-system

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OMERO

general

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ObjectJ

general

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OSCILLATOR

rosette

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PaCeQuant

leaf

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PANorama

fruit

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PDQuant

leafcell

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Petiole

leaf

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PhenoPhyte

leafrosette

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Phenotic

leaf

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Petiole App

leaf

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Phenotiki

rosette

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phenoVein

leaf

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Phytotyping4D

rosetteleaf

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PhenotyperCV

general

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PHIV-RootCell

single-root

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PlantCV

shootseedrosetteleaf

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PlantVis

single-root

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PotatoSize

fruitroot-system

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PlantRoot

root-system

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Plantix

leafshoot

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P-Trap

fruit

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REST

root-system

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PollenCounter

flowerfruit

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RhizoScan

root-system

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RAPA

rosetteflower

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RNQS

root-system

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rhizoTrak

root-system

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RootAnalyzer

single-root

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RootDetection

root-system

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RhizoVision Explorer

root-system

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RootFlowRT

single-root

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RootFly

root-system

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RootGraph

root-system

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Plant 3D (P3D)

shoot

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RootLM [Depricated]

single-root

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RootNav

root-system

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rosettR

rosette

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ROXAS

shoot

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RTipC

root-system

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RootTip Trace

single-root

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RooTrak

root-system

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RootReader2D

root-system

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RootReader3D

root-system

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RootScan

single-root

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RootScape

root-system

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RootSnap!

root-system

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Root System Analyser

root-system

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RootTipMulti [Depricated]

single-root

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RootTrace

root-systemsingle-root

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RootView

root-system

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Rosette Tracker

rosette

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SeedCount

seed

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Root-VIS

root-system

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saRIA

root-system

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SeedSize [Depricated]

seed

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SeedCounter

Seed

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SHAPE

general

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SIMAGIS MesoPlant

leaf

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SegRoot

root-system

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Sky

canopy

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Skye

root-systemleaf

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SmartGrain

seed

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MicroCT Grain Analyser

Seed

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SmartRoot

root-system

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Sorghum Reconstruction

shoot

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Stalk Analyzer

shoot

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Tomato Analyser

fruit

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StomataCounter

leaf

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Toaster

general

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TraitMill [Depricated]

shoot

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TrichEratops

cell

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TRiP

shoot

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Vaa3D

general

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VitiCanopy

canopy

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vitisFlower

flower

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WinCELL

cell

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WinDENDRO

shoot

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WinDIAS

leaf

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SeedExtractor

Seed

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WinFOLIA

leaf

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WinRhizo

root-system

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WinRhizoTRON

root-system

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WinSEEDLE

seed

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ACORBA

single-root

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ACA [DEPRECATED]

rosette

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Dan [Depricate]

leaf

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ARTT [Depricated]

single-root

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Disto-Pic [Depricated]

root-system

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Leaf Shape Analysis

leaf

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StomatalCounter [Depricated]

leaf

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EasyMPE

Canopy

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ARADEEPOPSIS

rosette

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Plant Screen Mobile

shoot

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Visual Grain Analyzer (VGA)

Seed

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Canofi

Leaf

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SeedGerm

Seed

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Fijiyama

any

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Grapeflowers counting

Inflorescence

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HSI-PP

general

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AnalyzER

Cell

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FRETENATOR2

General


Quantitative-Plant 2013-2025