PHIV-RootCell
UMR AGAP @ CIRAD
Overview
| Measured variables | anatomy |
|---|---|
| Operating system | mac, linux, windows |
| Licence | open-source, freeware |
| Automation level | semi-automated |
| Plant requirements | rice |
| Export formats | txt |
| Other information | ImageJ macro |
Scientific article(s)
PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantificationMarc Lartaud, Christophe Perin, Brigitte Courtois, Emilie Thomas, Sophia Henry, Mathilde Bettembourg, Fanchon Divol, Nadege Lanau, Florence Artus, Charlotte Bureau, Jean-Luc Verdeil, Gautier Sarah, Emmanuel Guiderdoni, Anne DievartFrontiers in Plant Science, 2015 View paper
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Description
We developed the PHIV-RootCell software to quantify anatomical traits of rice roots transverse section images. Combined with an efficient root sample processing method for image acquisition, this program permits supervised measurements of areas (those of whole root section, stele, cortex and central metaxylem vessels), number of cell layers and number of cells per cell layer. The PHIV-RootCell toolset runs under ImageJ, an independent operating system that has a license-free status.
Source: PHIV-RootCell article