HyDE
Plant Biology Laboratory @ Salk Institute for Biological Studies
Overview
| Measured variables | growth, length |
|---|---|
| Operating system | windows, mac, matlab |
| Licence | freeware |
| Automation level | automated |
| Plant requirements | any |
| Export formats | txt |
| Other information | - |
Scientific article(s)
Automated analysis of hypocotyl growth dynamics during shade avoidance in ArabidopsisBenjamin Cole, Steve A. Kay, Joanne ChoryThe Plant Journal, 2010 View paper
Similar tools
Other tools for the analysis of hypocotyl:
Description
HyDE (Hypocotyl Determining Engine) is a simple matlab-based program that measures hypocotyl growth in time-series images. The program will output raw length, smoothened length, and growth rate numerical data (though this feature is not implemented yet), as well as avi movies showing where the algorithm has predicted the hypocotyl to be.