Leibniz Institute of Plant Genetics and Crop Plant Research


Measured variables height, width, diameter, surface
Operating system windows, mac, linux
Licence freeware
Automation level automated
Plant requirements any
Export formats txt, csv, excell
Other information -

Scientific article(s)

HTPheno: An image analysis pipeline for high-throughput plant phenotyping
Anja Hartmann, Tobias Czauderna, Roberto Hoffmann, Nils Stein, Falk Schreiber
BMC Bioinformatics, 2011 View paper

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HTPheno is an open source image analysis pipeline that supplies a flexible and adaptable ImageJ plugin which can be used for automated image analysis in high-throughput plant phenotyping and therefore to derive new biological insights, such as determination of fitness. It provides the possibility to analyse colour images of plants which are taken in two different views (top view and side view) during a screening. Within the analysis different phenotypical parameters for each plant such as height, width and projected shoot area of the plants are calculated for the duration of the screening.

Source: HTPheno website

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