Cytomine
Systems and Modelling Group @ University of Liège
Overview
| Measured variables | surface |
|---|---|
| Operating system | windows, mac, linux |
| Licence | open-source, freeware |
| Automation level | automated, semi-automated |
| Plant requirements | any |
| Export formats | csv |
| Other information | Webase application |
Scientific article(s)
Collaborative analysis of multi-gigapixel imaging data using CytomineRaphaël Marée, Loïc Rollus, Benjamin Stévens, Renaud Hoyoux, Gilles Louppe, Rémy Vandaele, Jean-Michel Begon, Philipp Kainz, Pierre Geurts, Louis WehenkelBioinformatics, 2016 View paper
Similar tools
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Description
The CYTOMINE project (started in 2010) is continuously developing a rich internet application using modern web technologies, databases, and machine learning to foster active and distributed collaboration and ease large-scale image exploitation. Our software is e.g. being used by life scientists to help them better evaluate drug treatments or understand biological processes directly from whole-slide tissue images, by pathologists to share and ease their diagnosis, and by teachers and students for pathology training purposes. Although our initial focus was on biomedical research in cytology and histology whole-slide images, we are developing a generic software that is useful for other types of high-dimensional imaging data from various fields (e.g. botany, geology, astronomy, environmental biology, ...). To ease its reuse in any context, Cytomine is open-source. Cytomine website