PDQuant
Robatzek lab @ Sainsbury Laboratory
Overview
| Measured variables | localisation, n-plasmodesmata, perimeter, shape, width, length, surface |
|---|---|
| Operating system | windows |
| Licence | freeware |
| Automation level | automated |
| Plant requirements | Arabidopsis |
| Export formats | csv |
| Other information | Requires Acapella to run |
Scientific article(s)
A Developmental Framework for Complex Plasmodesmata Formation Revealed by Large-Scale Imaging of theArabidopsisLeaf EpidermisJessica Fitzgibbon, Martina Beck, Ji Zhou, Christine Faulkner, Silke Robatzek, Karl OparkaThe Plant Cell, 2013 View paper
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Description
PDQUANT provides an automated image processing workflow that detected and quantified plasmodesmata candidates, identified cell boundaries, and segmented immature cells from older cells. The algorithm segments and quantifies epidermal cells with differentiation of mature from young emerging cells.
Source: Fitzgibbon et al. (2013) The Plant cell , 25(1), 57-70