Virtual Plant @ INRIA


Measured variables n-cells, volume, shape, 3D-reconstruction, surface
Operating system windows, mac, linux
Licence freeware
Automation level semi-automated
Plant requirements any
Export formats open alea
Other information Works as a module of OpenALea

Scientific article(s)

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution
Romain Fernandez, Pradeep Das, Vincent Mirabet, Eric Moscardi, Jan Traas, Jean-Luc Verdeil, Grégoire Malandain, Christophe Godin
Nature Methods, 2010 View paper

Similar tools

Other tools for the analysis of cell:


Quantitative information on growing organs is required to better understand morphogenesis in both plants and animals. However, detailed analyses of growth patterns at cellular resolution have remained elusive. We developed an approach, multiangle image acquisition, three-dimensional reconstruction and cell segmentation-automated lineage tracking (MARS-ALT), in which we imaged whole organs from multiple angles, computationally merged and segmented these images to provide accurate cell identification in three dimensions and automatically tracked cell lineages through multiple rounds of cell division during development. These methods were used to quantitatively analyze Arabidopsis thaliana flower development at cell resolution, which revealed differential growth patterns of key regions during early stages of floral morphogenesis.

Source: Fernandezet al. (2010) Nature Methods , 7(7), 547-53

Share your experience

blog comments powered by Disqus